D purpose prediction by protein inter-residue distance styles. BMC Genomics 2011 12(Suppl

D function prediction by protein inter-residue distance styles. BMC Genomics 2011 twelve(Suppl 4):S12.

Mukherjee et al. Benchmarks in Genomic Sciences 2015, ten:8 http://www.standardsingenomics.com/content/10/1/EXTENDED GENOME REPORTOpen AccessHigh high-quality draft genome sequence and examination of Pontibacter roseus variety pressure SRC-1T (DSM 17521T) isolated from muddy waters of a drainage program in Chandigarh, IndiaSupratim Mukherjee1, PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/11011031 Alla Lapidus2,3, Nicole Shapiro1, Jan-Fang Cheng1, James Han1, TBK Reddy1, Marcel Huntemann1, Natalia Ivanova1, Natalia Mikhailova1, Amy Chen5, Krishna Palaniappan5, Stefan Spring4, Markus G er4, Victor Markowitz5, Tanja Woyke1, Brian J Tindall4, Hans-Peter Klenk4, Nikos C Kyrpides1,six and Amrita Pati1*AbstractPontibacter roseus is actually a member of genus Pontibacter relatives Cytophagaceae, course Cytophagia. Although the type species in the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of your same genus have Carbonic Anhydrase 1, Human (His) been found in different different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy h2o. Right here we explain the attributes of Pontibacter roseus strain SRC-1T along with its entire genome sequence and annotation from the tradition of DSM 17521T. The 4,581,480 bp very long draft genome is composed of twelve scaffolds with 4,003 protein-coding and fifty RNA genes and is particularly an element of Genomic Encyclopedia of Sort Strains: KMG-I challenge. Key terms: Aerobic, Gram-negative, Non-motile, Obligate aerobe, Halotolerant, Menaquinone, GEBA, KMG-IIntroduction The genus Pontibacter was very first described by Nedashkovskaya et al. [1] wherever they discovered and described a menaquinone generating pressure isolated from sea anemones. Various new species on the same genus happen to be claimed from the literature considering that then. Furthermore to Pontibacter roseus, there are actually eighteen species with validly published names belonging to Pontibacter genus as of creating this manuscript. Members of genus Pontibacter such as P. roseus, is of desire for genomic study due to their capacity to synthesize and use menaquinone-7 (MK-7) given that the primary respiratory quinone also concerning aid practical genomics scientific studies in the group. Pressure SRC-1T (= DSM 17521 = CCTCC AB 207222 = CIP 109903 = MTCC 7260) would be the sort strain of Pontibacter roseus, which was isolated from muddy h2o from an occasional drainage procedure of the residential region in Chandigarh, India [2]. P. roseus SRC-1T was at first reported being Effluviibacter roseus SRC-1T primarily* Correspondence: apati@lbl.gov one DOE Joint Genome Institute, Walnut Creek, California, United states Whole listing of author details is obtainable at the finish on the articledue to its non-motile mother nature and fatty acid composition [2]. Nevertheless, subsequent investigation of its fatty acid profile was revealed to get additional `Pontibacter-like’ and gliding motility was noticed being variable in other Pontibacter species [3]. Even more, its DNA G + C content, which was initially noted as 59 mol [2], was also emended to become fifty two.0?2.three mol [3], a worth additional agent of users of the genus Pontibacter. As such, it was reclassified as Pontibacter roseus SRC-1T [3]. Listed here we current a summary classification and attributes for Pontibacter roseus SRC-1T, together while using the genome sequence and annotation of DSM 17521T.Organism informationClassification and featuresP. roseus SRC-1T cells are non-motile, stain Gramnegative, will not variety spores and so are rod-shaped about.

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